homeoSplitter

Project members Name Function / Institution E-Mail / Phone Vincent RANWEZ Professor /  Montpellier SupAgro   UMR AGAP vincent.ranwez@supagro.fr+33 (0) 499 612 875 Yan HOLTZ Montpellier SupAgro   UMR AGAP yan.holtz.data@gmail.com Gautier SARAH INRA – Montpellier   UMR AGAP gautier.sarah@cirad.fr Morgane ARDISSON INRA – Montpellier   UMR AGAP Morgane.Ardisson@inra.fr+33 (0) 499 612 252 Sylvain SANTONI INRA – Montpellier   UMR AGAP Sylvain.Santoni@inra.fr+33 … Lire la suite

Release history (and associated jar files) Release 1.01September 2013 First release of HomeoSplitter associated to the original BMC bioinformatics publication.

Citing homeoSplitter If you find HomeoSplitter useful, please cite:Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat.Vincent Ranwez, Yan Holtz, Gautier Sarah, Morgane Ardisson, Sylvain Santoni, Sylvain Glémin, Muriel Tavaud-Pirra and Jacques DavidBMC Bioinformatics 2013, 14(Suppl 15):S15.

Disentangling homeologous contigs in allo-tetraploid assembly with homeoSplitter Using Next Generation Sequencing, SNP discovery is relatively easy on diploid species and still hampered in polyploid species by the confusion due to homeology. We develop HomeoSplitter; a fast and effective solution to split original contigs obtained by RNAseq into two homeologous sequences. It uses the differential … Lire la suite

HomeoSplitter: a software for disentangling homeologous contigs in allo-tetraploid assembly. Using Next Generation Sequencing, SNP discovery is relatively easy on diploid species and still hampered in polyploid species by the confusion due to homeology. We develop HomeoSplitter; a fast and effective solution to split original contigs obtained by RNAseq into two homeologous sequences. It uses … Lire la suite