Tools

MACSE

MACSE Barcode Alignments

This page provides alignments of barcoding sequences obtained in April 2020 by using the MACSE barcoding pipelines on sequences collected from the BOLD database. The pipeline is fully described in:

  • Frédéric Delsuc and Vincent Ranwez (2020). Accurate alignment of (meta)barcoding data sets using MACSE. In Scornavacca, C., Delsuc, F., and Galtier, N., editors, Phylogenetics in the Genomic Era, chapter No. 2.3, pp. 2.3:1-2.3:31. No commercial publisher | Authors open access book. ( hal-02541199).

Plantae

taxonomic groupmarkercodeupdateref alignmentref sequenceenriched alignmentnb seq in the alignmentnb seq in BOLDalignment stats
RhodophytarbcL1121-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz76377725align_stat.gz
ChlorophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz45644643align_stat.gz
BryophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz21732202align_stat.gz
LycopodiophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz531548align_stat.gz
PteridophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz74797601align_stat.gz
PinophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz28722921align_stat.gz
MagnoliophytarbcL1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz121302121989align_stat.gz
MagnoliophytamatK1129-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz63250107413align_stat.gz

Metazoa

taxonomic groupmarkercodeupdateref alignmentref sequenceenriched alignmentnb seq in the alignmentnb seq in BOLDalignment stats
PoriferaCOI429-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz39364149align_stat.gz
CnidariaCOI421-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz1558116645align_stat.gz
CtenophoraCOI429-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz228248align_stat.gz
AcanthocephalaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz13261494align_stat.gz
BrachiopodaCOI521-Oct-2020NA*refSeq.fastaNT_alignment.gz159163NA*
BryozoaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz17181754align_stat.gz
GastrotrichaCOI521-Oct-2020NA*refSeq.fastaNT_alignment.gz295306NA*
PlatyhelminthesCOI929-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz899710593align_stat.gz
AnnelidaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz4841848903align_stat.gz
SipunculaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz497513align_stat.gz
MolluscaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz150823155253align_stat.gz
NemerteaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz30023078align_stat.gz
ChaetognathaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz9931028align_stat.gz
RotiferaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz82468366align_stat.gz
KinorhynchaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz384389align_stat.gz
NematomorphaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz319327align_stat.gz
NematodaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1596617117align_stat.gz
TardigradaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz10631092align_stat.gz
OnychophoraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz11021138align_stat.gz

Arthropoda

taxonomic groupmarkercodeupdateref alignmentref sequenceenriched alignmentnb seq in the alignmentnb seq in BOLDalignment stats
ArachnidaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz243693245368align_stat.gz
PycnogonidaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz21792234align_stat.gz
ChilopodaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz23352390align_stat.gz
DiplopodaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz31763435align_stat.gz
MalacostracaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz103082106448align_stat.gz
OstracodaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz34213500align_stat.gz
CollembolaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz121381122146align_stat.gz
BlattodeaCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz1068310984align_stat.gz

Insecta

taxonomic groupmarkercodeupdateref alignmentref sequenceenriched alignmentnb seq in the alignmentnb seq in BOLDalignment stats
ArchaeognathaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz16131657align_stat.gz
DipteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz19018021907406align_stat.gz
ColeopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz344667348961align_stat.gz
DermapteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz12991398align_stat.gz
EmbiopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz270275align_stat.gz
EphemeropteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2331023812align_stat.gz
HemipteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz226066229127align_stat.gz
HymenopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz645143659513align_stat.gz
LepidopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz11322141139810align_stat.gz
MantodeaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz20302065align_stat.gz
MecopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz878895align_stat.gz
MegalopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz19071944align_stat.gz
NeuropteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz90609215align_stat.gz
OdonataCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz1541116344align_stat.gz
OrthopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2810329572align_stat.gz
PhasmatodeaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz16791820align_stat.gz
PlecopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1310013249align_stat.gz
PsocodeaCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz3066132910align_stat.gz
RaphidiopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz167174align_stat.gz
SiphonapteraCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz15561614align_stat.gz
StrepsipteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz342370align_stat.gz
ThysanopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1944519916align_stat.gz
TrichopteraCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz5074752412align_stat.gz
ApidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2000920609align_stat.gz
FormicidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz121494121954align_stat.gz
VespidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz62756487align_stat.gz
CulicidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz4704647267align_stat.gz
DrosophilidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2520925548align_stat.gz
GeometridaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz116489117512align_stat.gz
LycaenidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2056720897align_stat.gz
NoctuidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz8999291124align_stat.gz
NymphalidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz5023351917align_stat.gz
PapilionidaeCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz61866460align_stat.gz
PieridaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1158211955align_stat.gz
PyralidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2828928424align_stat.gz
SaturniidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2962029973align_stat.gz
SphingidaeCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz2401824367align_stat.gz
UraniidaeCOI521-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz17451794align_stat.gz

Chordata

taxonomic groupmarkercodeupdateref alignmentref sequenceenriched alignmentnb seq in the alignmentnb seq in BOLDalignment stats
EchinodermataCOI921-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz2609226574align_stat.gz
HemichordataCOI921-Oct-2020NA*refSeq.fastaNT_alignment.gz127135NA*
CephalochordataCOI529-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz383410align_stat.gz
TunicataCOI1321-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz34553735align_stat.gz
CyclostomataCOI221-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz891911align_stat.gz
ChondrichthyesCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1845918781align_stat.gz
ActinopterygiiCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz226605230024align_stat.gz
SarcopterygiiCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz118127align_stat.gz
AmphibiaCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1912219488align_stat.gz
LepidosauriaCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz1407914464align_stat.gz
TestudinesCOI221-Oct-2020refAlign.fastarefSeq.fastaNT_alignment.gz17821904align_stat.gz
CrocodyliaCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz658713align_stat.gz
AvesCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz4465145397align_stat.gz
MammaliaCOI229-Apr-2020refAlign.fastarefSeq.fastaNT_alignment.gz117363121180align_stat.gz

*These three data sets containing few sequences were directly aligned using the OMM_MACSE pipeline