URL : samples/delegations/nucleos/allow_NT/
Nucleotides alignments may contain inexistent nucleotides which can prevent MACSE from working correctly, you can bypass this problem using the allow_NT option :
- java -jar macse.jar -prog translateNT2AA -seq sequences.fasta -allow_NT « ? »
This example will read allow_NT nucleotides as if they were ‘N’ letters.
Note that some characters can be misinterpreted by the console, so it is advised to add double quotes.