Allowed nucleotides

Unidentified nucleotides

URL : samples/delegations/nucleos/allow_NT/

Nucleotides alignments may contain inexistent nucleotides which can prevent MACSE from working correctly, you can bypass this problem using the allow_NT option :

  • java -jar macse.jar -prog translateNT2AA -seq sequences.fasta -allow_NT « ? »

This example will read allow_NT nucleotides as if they were ‘N’ letters.

Note that some characters can be misinterpreted by the console, so it is advised to add double quotes.