MACSE Documentaion

Citing MACSE If you find MACSE useful, please cite: If you find OMM_MACSE_V10 pipeline useful, please cite:

Download tutorial files Download documents related to MACSE v2.03 Download documents related to MACSE v1.2 Barcoding alignments build with MACSE barcoding pipelines For each dataset the sequences gathered from the BOLD database and the reference sequence are provided in the following zip archive and all result files are available in this zip archive. taxon marker … Lire la suite

This is the documentation for pipelines based on MACSE v2 1. Overview MACSE (Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons) provides a complete toolkit dedicated to the multiple alignment of coding sequences that can be leveraged via both the command line and a Graphical User Interface (GUI). Various strategies can be … Lire la suite

MACSE Pipeline quickstart The MACSE v2 toolkit provides the building blocks to construct powerful alignment pipelines. However, the number of available subprograms and options featured in this version could be problematic for occasional users. We hence included a Graphical User Interface (GUI) in MACSE V2 and provide some of our own MACSE V2 pipelines. These … Lire la suite

This is the documentation for MACSE v2.00 1. Overview MACSE (Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons) provides a complete toolkit dedicated to the multiple alignment of coding sequences that can be leveraged via both the command line and a Graphical User Interface (GUI). Multiple sequence alignment (MSA) is a crucial … Lire la suite

MACSE installation and fundamental usage 1. Program installation and running MACSE is really easy to install. Just download the jar file of the latest release of MACSE (e.g. macsev2.0.jar) on your computer. Note that JAVA (JRE above 1.5) should be installed on your computer (download JAVA ). To launch the graphical version of MACSE (GUI), … Lire la suite