Pervasive hybridizations in the history of wheat relatives
Sylvain Glémin, Celine Scornavacca, Jacques Dainat, Concetta Burgarella, Véronique Viader, Morgane Ardisson, Gautier Sarah, Sylvain Santoni, Jacques David, and Vincent Ranwez
Science advances


GENE LIST
1) MappedOnHordeumChromosomes_OneCopyGenes.txt
List of one-copy genes with their coordinates on the Hordeum genome


ALIGNMENTS
2) IndividualAlignements_OneCopyGenes.zip
Individual alignment for all one-copy genes
3) FullConcatenation_OneCopyGenes.zip
Concatenation of all one-copy genes
4) Concatenation10Mb_OneCopyGenes.zip
Alignements corresponding to the concatenation of genes over 10Mb windows

TREES
5) MLtree_OneCopyGenes.tree
ML tree of the concatenation
6) MLtree_OneCopyGenes_ultrametric.tree
Ultrametric version of the same tree
7) Densitree_OneCopyGenes.nex
Liste of 10Mb ML trees used for the densitree plot

HYDE RESULTS
8) HydeResults_OneCopyGenes.csv
List of Hyde results for all possible triplets of individuals
- Hind: focal individual
- P1ind: parent1 individual
- P2ind: parent2 individual
- Hspecies: species of focal individual
- P1species: species of parent1 individual
- P2species: species of parent2 individual
- HillStat: Hill's statistics
- Pvalue: corresponding p-value (no correction)
- gamma: proportion of parent2
- Nsnp: total number of SNPs used for the given triplet
- Topo1: # of SNPs supporting ((P1,H),P2)
- Topo2: # of SNPs supporting ((P2,H),P1)
- Topo3: # of SNPs supporting ((P1,P2),H)